nf-core / chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

Home Page:https://nf-co.re/chipseq

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nextflow intogen.nf error: No such variable: input

tanayb001 opened this issue · comments

Hi I want to use Intogen to identify the driver genes od our cohort. Below is my commands. I'm getting these errors and I'm not able to find out the reason and how to solve it.

iit@iit:~/intogen-plus$ nextflow run intogen.nf --input /home/iit/Documents/our_mutations.txt
N E X T F L O W ~ version 19.01.0
Launching intogen.nf [mighty_pauling] - revision: eb5992f5c0
WARN: Invalid config manifest attribute doi
WARN: There's no process matching config selector: Mutrate
ERROR ~ No such variable: input

-- Check script 'intogen.nf' at line: 18 or see '.nextflow.log' file for more details
iit@iit:~/intogen-plus$

Please let me know how to solve and run it.

Thanks.

I am afraid you should ask for help in the Intogen repository since here you can only post issues regarding the nf-core/chipseq pipeline.