`--input-pcr-primers` listed in CLI help options despite being removed in v3
kapsakcj opened this issue · comments
Just want to report that the --input-pcr-primers option for nextclade run is listed in the help options. According to migration docs here: https://docs.nextstrain.org/projects/nextclade/en/stable/user/migration-v3.html#some-cli-arguments-for-individual-input-files-are-removed this option has been removed.
Is it still available as an option? or perhaps just an oversight on the CLI help options?
I don't need to use this option, just wanted to let you know.
to reproduce:
$ docker run --rm nextstrain/nextclade:3.3.1 nextclade run --help | grep -A 4 'pcr-primers'
--input-pcr-primers <INPUT_PCR_PRIMERS>
Path to a CSV file containing a list of custom PCR primer sites. This information is used to report mutations in these sites.
Supports the following compression formats: "gz", "bz2", "xz", "zstd". Use "-" to read uncompressed data from standard input (stdin).
Ah ok, thanks for the explanation.