neuro-stivenr / Fernet

Freewater EstimatoR using iNtErpolated iniTialization

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Single Shell Free Water Estimation

Adapted for use in Functional Neuroimaging, Cognitive and Mobility Laboratory

Original Description

This Python package contains FERNET, a tool for Free-watER iNvariant Estimation of Tensor on single shell diffusion MR data.

FERNET uses NIfTI as its data format for MR images, using the "nii.gz" file extension. It uses the FSL convention for "bval" and "bvec" text files.

Installation on UNIX-based system

make install
ln -s $(pwd)/fernet.sh <SOME DIR ON PATH>

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Freewater EstimatoR using iNtErpolated iniTialization

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