NelleV

jhepc

John Hunter Excellence in Plotting Contest

2019timecourse-rnaseq-pipeline

moanin

Timecourse transcriptomic analysis

presentations

Presentations

scikit-learn

scikit-learn main repo

pastisnb

computationally-reproducible-manuscript

nellev.github.io

takefive

Unfolding the genome: the case study of P. falciparum

2022-data-challenge-starting-kit

2022-mines-HPC-AI-TD

bibliography

circhic

A python library to display HiC data on a circular strip and to integrate genomic data

docker_containers

grave

GraVE is a Graph Visualization Package combining ideas from Matplotlib and NetworkX

gray

HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

iced

Normalizing Hi-C contact counts efficiently

matplotlib

matplotlib: plotting with Python

pastis

Poisson-based algorithm for stable inference of DNA Structure

plotmastery

Utility functions for matplotlib to make publication ready figures.

scikit-image

Image processing in Python

sowhat

template-research-website

test-website

timecoursedata

Gene expression timecourse data in R.

topGO

Enrichment Analysis for Gene Ontology

using-python-for-science

The essential guide to using Python for scientists

watchtower

whedon

Command-line utilities to manage JOSS submissions. May one day be a sentient being.