motion correction failed
Frank497 opened this issue · comments
I was trying out the mcorr_cnmf demo notebook and successfully ran the codes and set up dataframe. However, when I perform motion correction (in the "Run an item" section) it gives:
and I ignored it and ran the rest of the code and got this in the "Output" section:
I wonder what went wrong and how could I fix it.
I have a hunch that the latest version of caiman changed imports which then broke thing in movies.get_file_size()
. What version of caiman are you on and what version of mesmerize-core?
posted an issue at caiman repo: flatironinstitute/CaImAn#1295
@Frank497 if you go down to v1.10.2 it should work
@kushalkolar Thanks I'm on 1.10.3 version caiman and 0.3.0 version mesmerize_core
@kushalkolar It do fixed the problem to downgrade the caiman version to v1.10.2. The motion correction performs successfully now, however I met another problem on visualization now