Error step 10
mdieser opened this issue · comments
Hello again - Any explanation what may cause an issue with certain files in the genecluster folder?
Thanks,
Markus
Starting step10: create json file for geneDataTable visualization
Traceback (most recent call last):
File "./panX.py", line 322, in
myPangenome.export_geneCluster_json()
File "/software/pangenomeanalysis/pan-genome-analysis/scripts/pangenome_computation.py", line 225, in export_geneCluster_json
geneCluster_to_json(self.path, self.enable_RNA_clustering, self.store_locus_tag, self.raw_locus_tag, self.optional_table_column)
File "/software/pangenomeanalysis/pan-genome-analysis/scripts/sf_geneCluster_json.py", line 171, in geneCluster_to_json
'"divers":"'+gene_diversity_Dt[clusterID]+'"',
KeyError: 'GC00000193_3'
Did you run this of a clean directory, or could there have been geneCluster files in the folder from a previous run?
Thank you. That solved the problem.
Markus