NedaTavakoli

Modeling-and-Clustering-Genome-using-Bidirectional-LSTM

hg

Voter-Turnout-Prediction

Artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

awesome-community-detection

A curated list of community detection research papers with implementations.

awesome-network-embedding

A curated list of network embedding techniques.

ClaraGenomicsAnalysis

SDK for GPU accelerated genome assembly and analysis

havg

hged_cpp

VF2

ComE

Implementation of ComE algorithm

DeepSimulator

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

From-0-to-Research-Scientist-resources-guide

Detailed and tailored guide for undergraduate students or anybody want to dig deep into the field of AI with solid foundation.

GraphSlimmer

Reduced Genome Graphs with Haplotype Information

hged

Haplotype_aware variation graphs_edit disatance

kann

A lightweight C library for artificial neural networks

LLMsPracticalGuide

A curated list of practical guide resources of LLMs (LLMs Tree, Examples, Papers)

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

notebook

Jupyter Interactive Notebook

parahmm

Parallel Implementation of HMM on Multicore Platform

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

protobuf

Protocol Buffers - Google's data interchange format

psac

Parallel Suffix Array, LCP Array, and Suffix Tree Construction

pytorch-language-model

Simple LSTM-based word-level language model in PyTorch

racon-gpu

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

RedMap

vg

tools for working with variation graphs

YouCompleteMe

A code-completion engine for Vim