summary output
jis2008 opened this issue · comments
It would be nice to have a summary output file, similar like picard summary file where overall sequence error rate for 6 (or 12) types of base-change. That would be helpful for users without further process tasmania output through tableau (when they don't have it).
@jis2008, I wrote the script jianscript.py that you Can find in the branch jianscript. you run it:
python jianscript.py Tasmanian_table.tsv
i think @jis2008 was suggesting that you add an additional e.g. --summary-output option to the tool so it can produce such output natively.
probably not worth much effort, but if it's easy...
Sure!
We can develop the output with this script and once @jis2008 gives green flag we add it to Tasmanian?
BTW I added the improved version of the script with an output more similar to Picard