missing function "init_mart_human_grch37"

Question

missing function "init_mart_human_grch37"

aarthi-mohan opened this issue 4 years ago · comments

Hi there,

I am trying to use the 'genes.R' script and bringing to your attention that the file might be missing the 'init_mart_human_grch37()' function definition.

Rscript ~/bioscripts/gene_panels/genes.R phenotips_hpo2gene_coordinates 1111.tsv

Error in init_mart_human_grch37() :
  could not find function "init_mart_human_grch37"
Calls: fcn
In addition: Warning message:
replacing previous import 'BiocGenerics::dims' by 'Biobase::dims' when loading 'AnnotationDbi'
Execution halted

Thanks,
Aarthi

Serhiy Naumenko · Answer 1 · Wed Jul 22 2020 04:05:45 GMT+0800 (China Standard Time)

HI @aarthi-mohan !

Thanks for reporting, you are right.

I've fixed it here: https://github.com/naumenko-sa/bioscripts/blob/master/gene_panels/genes.R#L334

Sergey