mazicheng's starred repositories
AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
MaoZeDongAnthology
***选集
localcolabfold
ColabFold on your local PC
sei-framework
code to run sei and obtain sei and sequence class predictions
methylbert
A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
cpg-transformer
CpG Transformer for imputation of single-cell methylomes
OAReactDiff
An object-aware diffusion model for generating chemical reactions
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
single-cell-best-practices
https://www.sc-best-practices.org
pytorch-vq-vae
PyTorch implementation of VQ-VAE by Aäron van den Oord et al.
vector-quantize-pytorch
Vector (and Scalar) Quantization, in Pytorch
everything_at_once
This is the official implementation of "Everything at Once - Multi-modal Fusion Transformer for Video Retrieval". CVPR 2022
HistoneClocks
This repository contains the code and data to reproduce the results of our paper entitled "Histone mark age of human tissues and cells".
awesome-multi-omics
List of software packages for multi-omics analysis
ColabFold-cycpep-dock
Making Protein folding accessible to all!
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
DNA-Diffusion
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
transformers
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
Wandb_Tutorial
How to use wandb?