Myo T. Naung's repositories
Probe-Maker
Probe-Maker is intended for design of hybridisation probes for Plasmodium falciparum for long-read amplicon sequencing.
alphafold
Open source code for AlphaFold.
atacseq_pipeline
Ultimate ATAC-seq Data Processing & Analysis Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream processing and unsupervised analyses steps using bash, python, and R. Reproducibility is ensured by using conda and Singularity.
bioinfLatexStyles
Bibtex compatible latex templates for a selection of Bioinformatics and Genomics journals
biostructmap
A Python package for mapping sequence aligned data onto protein structures
Clair
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
course_2021_radboud
Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/
Naung-et-al-2021
Bioinformatics Pipeline for MalariaGen's Pf3k and MalariaGen Community (PNG) WGS analysis which is used to characterise diversity analysis of vaccine candidate antigens
enrichment-analysis-training
Course material for Enrichment analysis course by SIB
Immune_escape_calculation
Supplementary materials to Naung et al., 2023
phyloseq-extended
Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" provided by the platforms Migale and Genotoul
serology-of-vaccine-antigens
Differential patterns of naturally acquired immune responses to Plasmodium falciparum vaccine antigens with various levels of genetic diversity
vaxpack
Population Genetic Analysis Gadget for Haploid Organisms