mym88mym's repositories
Augustus
Genome annotation with AUGUSTUS
BIND_annotation
Scripts, notes and documents about the BIND annotation workflow (BIND: ab initio gene predictions by BRAKER combined with gene predictions INferred Directly from alignment of RNA-Seq evidence to the genome.)
biocode
Bioinformatics code libraries and scripts
Bioinformatics-BC
New to Bioinformatics? Start Here!
bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
BioProv
A provenance library for bioinformatics workflows 🧬 🔀 📝
CharGer
Characterization of Germline variants
cheatsheets
Official Matplotlib cheat sheets
common_analyses
Repository of common bioinformatics scripts
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
genomics-workshop
Genomics Workshop Overview
learn-python
learn how to program in python from the very basics like variables, loops and functions to some advanced materials such as functional programming and list comprehension
metagenomics_tutorial
Analyzing shotgun data
MetaModels
Scripts to analyse metagenome-wide metabolic models
metaphor
Metaphor: Metagenomics Pipeline for Short Reads
numpy-100
100 numpy exercises (with solutions)
pathongs
Pathogen NGS Documentary
primer3
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
Python-100-Days
Python - 100天从新手到大师
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
scCustomize
Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
Target-panel-based-CNV-detection
Detection of CNVs (deletion/duplication) in target panel based NGS data
TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
ThreeDRNAseq
A shiny App for differential expression and differential alternative splicing analysis
tinycov
standalone command line utility written in python to plot coverage from a BAM file
TMLflow
Snakemake pipeline for SNV and CNV analysis using IonTorrent data
TS-1
Torrent Suite