Giters

mwaskom / lyman

Data pipelines and analysis library for functional MRI

Home Page:http://www.cns.nyu.edu/~mwaskom/software/lyman

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Complete overhaul of lyman command line interface

mwaskom opened this issue · comments

commented

This was started in #106 but only enough to get things running to test the new preprocessing workflow.

The new approach is to have a single lyman command line executable with multiple sub-commands corresponding to discrete processing steps (i.e. lyman preproc). Need to figure out how to best leverage argparse to do this (or whether it will be easier to move to something like click, as argparse feels a little bit cumbersome already).