MUQING YAN's repositories
STRetch
Method for detecting STR expansions from short-read sequencing data
MIT000
Language:Python000
Language:HTML000
scripts
Some small scripts
Language:R000
HaplotypeCaller
The GATK4(HaplotypeCaller) pipeline written in Bash
Language:Python000
validations
blue kale validation repo for training
000
mNGS
mNGS DB update example
Language:Perl000
VIC
VIC is a bioinformatics software tool for the interpretation of sequence variants in cancer by the AMP-ASCO-CAP 2017 standards and guidelines. The input to wVIC is an annotated file generated by ANNOVAR or un-annotated AVinput/VCF files, while the output of VIC is the classification of variants into 'Benign', 'Likely benign', 'Uncertain significance', 'Likely pathogenic' and 'Pathogenic', together with detailed evidence code.
Language:Java000