Kiran Mukhyala's repositories
septic_shock_degs
Septic Shock Differential Expression Genes Analysis
bio_embeddings
Get protein embeddings from protein sequences
scripts
An eclectic collection of helper scripts created for Jalview. Might be of use to others.
alphafold
Open source code for AlphaFold.
protwis
Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).
ANARCI
Antibody Numbering and Antigen Receptor ClassIfication
pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
Smith-Waterman-Algorithm
Python implementation of Smith Waterman Algorithm
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
parse-pdb
A small utility for parsing PDB files into useable JSON
biopython
Official git repository for Biopython (converted from CVS)
Biobase
Biobase: Base functions for Bioconductor
NGI-RNAseq
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
R-ecology-lesson
:notebook: Data Carpentry R lessons on ecology.
Intro-to-rnaseq-hpc-gt
Introduction to RNA-seq using HPC
cancerhaplotypeinheritance
Using machine learning to align individual genome and population variant graphs
multiGSEA.shiny
Provides shiny components to visualize multilGSEA results
shiny-training-2017-05-genentech
Slides and demo materials for the 2-day Intermediate Shiny Workshop at Genentech, May 2017
BigData
Running Big Data applications within SLURM on the ACCRE traditional HPC cluster.
github-games
A fun way to learn about Git and GitHub
dev-nov-02
Nov 02 GH for Devs