Michael Paquette's repositories
tractoGRAPHy
Graph-based alternate representation for dMRI probabilistic tractography.
BrainHack2018-Leipzig-Python
Collection of Jupyter notebook for the Python hands-on tutorial at BrainHack 2018 Leipzig
gnlc_waveform
Study of the impact of Gradient Non-Linearity on B-tensor diffusion encoding.
autodmri
Automated characterization of noise distributions in diffusion MRI data
AutoTrimps
Automation for the idle incremental game 'Trimps'
axDiamFig
Figure and code for axon diameter paper
blochchainlab_misc_scripts
Miscellaneous small scripts
bruker
Scheme generation and conversion for our Bruker scans
dwi_preprocessing_notes
DWI preprocessing tutorial using only MRtrix, FSL and ANTS
ernst_angle
Flutter app to compute Ernst angle.
fastpli
Fiber Architecture Simulation Toolbox for 3D Polarized Light Imaging
fibernavigator
The original Fibernavigator: tool for vizualization of DTI and MRI data
gradunwarp
Gradient Unwarping in Python
Intro-to-MRI
This is Jupyter notebook/python code developed for a UW-Madison introductory MRI class.
linear_planar
Preprocessing and fitting scripts for double PGSE data
lsd
Local Spherical Deconvolution (LSD): a diffusion MRI method
phantomas
Create realistic digital phantoms in diffusion MRI.
postmortem_temp_corr
Correction of diffusion MRI signal in the presence of temperature drift
scilpy
The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
SMT_gradnonlin
Exploring gradient non-linearity correction for SMT -like models