Giters
motiwari
/
BanditPAM
BanditPAM C++ implementation and Python package
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Stargazers:
647
Watchers:
9
Issues:
202
Forks:
38
motiwari/BanditPAM Issues
Race condition when calculating the loss
Updated
a year ago
Unpredictable Performance with Parallelization Enabled on ScRNA Dataset
Updated
a year ago
pip install banditpam error
Updated
a year ago
Comments count
9
Upload M1 Mac wheels to TestPyPI and PyPI
Updated
a year ago
Need GHA to build wheels for Windows and push to PyPI + GHA to build package and run tests on Windows
Updated
a year ago
Include OpenMP support on Windows
Updated
a year ago
Comments count
1
Change github actions that upload wheels to upload to TestPyPI on PR update, and PyPI on release
Closed
a year ago
Minor performance difference between BanditPAM and sklearn for a small number of data points
Updated
a year ago
BanditPAM is slower than sklearn
Closed
a year ago
User report: algorithm choosing wrong arms (correctness)
Closed
a year ago
Comments count
8
Link to full paper with appendices in `README.md`
Updated
a year ago
New error in GHA
Closed
a year ago
Cannot build locally with `conda` `python` due to `x86_64` vs. `arm64` mismatch
Updated
a year ago
Add citation to "About" section of repo
Updated
a year ago
Upload wheels to conda
Updated
a year ago
Bug Report: Slower than k-means on `n=10,000` moon dataset
Updated
2 years ago
cannot pickle 'banditpam.KMedoids' object
Updated
a year ago
Comments count
3
pip install on windows doesn't use MS Visual C++ compiler
Closed
a year ago
Comments count
1
Make `R_package` subdirectory lint-compliant
Updated
2 years ago
Standardize `banditpam` across URL and all code
Updated
2 years ago
`max_iter` not being passed correctly from Python
Closed
a year ago
Comments count
1
Implement `buildLoss` function
Closed
a year ago
Upload banditpam to anaconda channels
Updated
2 years ago
Change `exact` in `buildTarget` and `swapTarget` to bool
Closed
a year ago
Make sure all calls to `calcLoss` are the correct order
Updated
2 years ago
Cmake issue
Closed
2 years ago
Comments count
13
Change final calls of `calcBestDistancesSwap(..., swapPerformed=false)` to `calcLoss`
Updated
2 years ago
FastPAM1 is broken
Closed
a year ago
Don't perform any swaps if k=1
Closed
a year ago
Separate parameters and settings semantically
Updated
2 years ago
Have a null constructor that only requires passing `k`
Updated
2 years ago
Add status badges
Closed
2 years ago
Fix readthedocs link in README
Updated
2 years ago
Document OMP functrions
Updated
2 years ago
#include carma only for Python
Updated
2 years ago
Possible clashing of compiler opts
Updated
2 years ago
Fix compiler flags
Updated
2 years ago
When compiling mac wheels, add `'-framework Accelerate'` to compiler flags
Updated
2 years ago
Address sanitizer detects memory leaks with `new` for `cache`
Updated
2 years ago
Make an enum for sample complexity category
Updated
2 years ago
Clean up scripts in `scripts`
Updated
2 years ago
Implement `getTotalSwapTime` and `getTimePerSwap`
Updated
2 years ago
Make sure wheels aren't being built with `-g` flag
Updated
2 years ago
Some compiler flags are duplicated
Updated
2 years ago
Bug when `max_iter=1` is passed
Updated
2 years ago
Refactor code to make C++ code in top-level and each language binding in subdirectories
Updated
2 years ago
Transitioning to a single code base for R/Python
Updated
2 years ago
Implement a `make clean`
Updated
2 years ago
User report: docker installation instructions in `README` are incomplete
Updated
2 years ago
Fix platform-specific guide links in `README`
Updated
2 years ago
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