Cass Li's repositories
useful_functions_for_healthcare_data_analysis
This repository holds handy functions for healthcare data analysis.
tidyproteomics
An S3 data object and framework for common quantitative proteomic analyses
linkedin-skill-assessments-quizzes
Full reference of LinkedIn answers 2022 for skill assessments (aws-lambda, rest-api, javascript, react, git, html, jquery, mongodb, java, Go, python, machine-learning, power-point) linkedin excel test lösungen, linkedin machine learning test LinkedIn test questions and answers
Metadata_analysis_code_final
Second round of analysis with improved protocols
cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
stat_rethinking_2022
Statistical Rethinking course winter 2022
shinyWidgets
shinyWidgets : Extend widgets available in shiny
fullstack-course4
Example code for HTML, CSS, and Javascript for Web Developers Coursera Course
scrat
Sing Cell R Analysis Toolkit
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
HCA_Heart
This is the official repository for the Human Cell Atlas Heart project.
velocyto.R
RNA velocity estimation in R
dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
data.table
R's data.table package extends data.frame:
velocyto.py
RNA velocity estimation in Python
ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
PHATE
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
STAR
RNA-seq aligner
sra-tools
SRA Tools
scDD
R package to identify genes with differential distributions in single-cell RNA-seq
datasciencectacontent
repository for Community Mentor content related to the Johns Hopkins University Data Science Specialization on Coursera
CITE-seq-Count
Small script that allows to count TAGS from a CITE-seq experiment
box-plots-sklearn
An implementation of some of the tools used by the winner of the box plots competition using scikit-learn.