Giters

morrislab / phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data.

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

TCGA Parsing Error: 'CallData' object has no attribute 'TD'

sidhomj opened this issue · comments

commented

Trying to run phylowgs on TCGA .vcf files and I'm running into this error. I saw there was a previous issue that said I had to specify sample type as mutect_smchet but can't see where that is an input parameter?

Thanks!

commented

I've also added an example vcf file i'm trying to parse from the TCGA
TCGA-86-7714.vep.vcf.txt