mmcdermott

EventStreamGPT

Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex internal dependencies.

comprehensive_MTL_EHR

Source code for a comprehensive analysis of MTL over EHR timeseries data.

How-to-PhD

A collection of resources and information for concrete skills that are helpful when pursuing a PhD in computer science (specifically in ML/AI or related disciplines)

MEDS_transforms

A simple set of MEDS polars-based ETL and transformation functions

structure_inducing_pre-training

MIMICIV_FMs_public

Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.

AUC_is_all_you_need

Analyzing different ML model comparison metrics

MEDS-DEV

Platform for Inductive Experiments over Medical Data

MEDS_Tabular_AutoML

Limited automatic tabular ML pipelines for generic MEDS datasets.

nested_ragged_tensors

Utilities for efficiently working with, saving, and loading, collections of connected nested ragged tensors in PyTorch

rc_files

RC Files

Medical_T0pp

For assessing T0pp's medical abilities

MEDS_pytorch_dataset

A template PyTorch dataset for structured data in the MEDS format. Best paired with https://github.com/mmcdermott/MEDS_polars_functions

MEDS_TAB_MIMIC_IV

Auto Tabularization for MIMIC-IV

ML_mixins

Useful Python Mixins for ML

pytorch_lognormal_mixture

An easily installable version of the PyTorch Lognormal Mixture Model from https://github.com/shchur/ifl-tpp

arXiv_scan

Search through arXiv via LLMs and simpler tools for instances of a claim being made

bigtree

Tree Implementation and Methods for Python, integrated with list, dictionary, pandas and polars DataFrame.

datasets

🤗 The largest hub of ready-to-use datasets for ML models with fast, easy-to-use and efficient data manipulation tools

df_parser_matcher

A simple library for a safe, expressive, config-file friendly, and readable DSL for encoding simple dataframe operations.

gene_expression_modelling_public

Public version of Gene Expression Modelling Utilities referenced in https://github.com/mmcdermott/cnn_graph/blob/master/dx_and_drug_classification.ipynb

gpt4_prompts

Prompts and recipes for GPT-4 usage for academics

hydra_profiler

A simple package to help profile hydra jobs via a simple config modification.

ifl-tpp

Implementation of "Intensity-Free Learning of Temporal Point Processes" (Spotlight @ ICLR 2020)

MEDS_TAB_EICU

MEDS_TPPs

ESGPT style temporal point process transformers for generative modeling (and relatedly for supervised training) over MEDS or event-stream style data.

polars

Fast multi-threaded, hybrid-out-of-core DataFrame library in Rust | Python | Node.js

synthetic_models

Utilities for generating synthetic scores and labels given target performance characteristics

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

useful_hydra_resolvers

A collection of useful Hydra (hydra.cc) resolvers for building CLI applications