mlorthiois

ANNEXA

Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs), and count gene/transcript expression levels.

TransforKmers

[WIP] A task-agnostic facility to pretrain/finetune/use a Transformer based model to classify your biological sequences.

REPL-region.nvim

Neovim plugin powered by treesitter to run a code region in a REPL shell.

macfab

Snakemake pipeline to benchmark different annotations

markdown-report-pdf

Use pandoc to generate a PDF report from a Markdown file.

Aho-Corasick

C implementation of Aho-Corasick algorithm

BioTools

Personal scripts and collections for Bioinformatics analysis

dotfiles

Personnal dotfiles (ansible, zsh, neovim, kitty, ...).

gene-annotation-summary

ml_project

ML Project

full-stack-aws

A reservation management website to explore full-stack development deployed on AWS with Terraform.