Trouble Installing PhyloCSF

[ataylor22]

Hello Dr. Lin,

I followed the previous steps in the README file, but while running the make command I get the following error:

PhyloCSF$ make
make -C lib/CamlPaml reinstall
make[1]: Entering directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml'
make uninstall
make[2]: Entering directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml'
ocamlfind remove CamlPaml
Removed /home/hamiltonat/.opam/default/lib/CamlPaml/META
Removed /home/hamiltonat/.opam/default/lib/CamlPaml
make[2]: Leaving directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml'
make install
make[2]: Entering directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml'
ocamlbuild -cflag '-unsafe-string' -use-ocamlfind CamlPaml.cma CamlPaml.cmxa
Finished, 72 targets (72 cached) in 00:00:02.
ocamlfind install CamlPaml META _build/CamlPaml.cmi _build/CamlPaml.cma _build/CamlPaml.cmxa _build/CamlPaml.a
Installed /home/hamiltonat/.opam/default/lib/CamlPaml/CamlPaml.a
Installed /home/hamiltonat/.opam/default/lib/CamlPaml/CamlPaml.cmxa
Installed /home/hamiltonat/.opam/default/lib/CamlPaml/CamlPaml.cma
Installed /home/hamiltonat/.opam/default/lib/CamlPaml/CamlPaml.cmi
Installed /home/hamiltonat/.opam/default/lib/CamlPaml/META
make[2]: Leaving directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml'
make[1]: Leaving directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml'
make -C src clean
make[1]: Entering directory '/home/hamiltonat/PhyloCSF/src'
rm -f *~
ocamlbuild -cflag '-unsafe-string' -clean
Finished, 0 targets (0 cached) in 00:00:00.
00:00:00 0 (0 ) STARTING -------- |make[1]: Leaving directory '/home/hamiltonat/PhyloCSF/src'
make -C src
make[1]: Entering directory '/home/hamiltonat/PhyloCSF/src'
rm -f ForkMaybe.ml
ln -s ForkNo.ml ForkMaybe.ml
ocamlbuild -cflag '-unsafe-string' -use-ocamlfind PhyloCSF.native

• ocamlfind ocamlc -c -unsafe-string -g -package batteries -package CamlPaml -pp ocaml+twt -o PhyloCSF.cmo PhyloCSF.ml
  File "PhyloCSF.ml", line 424, characters 88-105:
  Error: Unbound value Lexing.from_input
  Command exited with code 2.
  Compilation unsuccessful after building 10 targets (0 cached) in 00:00:03.
  Makefile:7: recipe for target 'all' failed
  make[1]: *** [all] Error 10
  make[1]: Leaving directory '/home/hamiltonat/PhyloCSF/src'
  Makefile:8: recipe for target 'PhyloCSF' failed
  make: *** [PhyloCSF] Error 2

This issue seems similar to #21. Any suggestions?

Thank You

[danielrebib]

Hi, same problem here!