mlin / PhyloCSF

Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions

Home Page:http://compbio.mit.edu/PhyloCSF

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Fatal error on running PhyloCSF in too old kernel system

msswjw opened this issue · comments

Dear Mike Lin,
I met a problem when I run PhyloCSF in our linux system. It reported that 'FATAL: kernel too old'. Could you help me how to solve this problem.
Many thanks, Jie

I met the same problem with you when I want to use it on our server. You should compile the source code into executable files so that you can use it in your linux system. You can find some tips in the README doc.

commented

Dear Mike Lin,
I am new to bioinformatics, could you tell me how can I get the parameters for empirical codon substitution frequencies and the parameters for equilibriun codon frequencies?
Thank you very much. Zhang yuanyuan