Missing GFF file for SPECTRA_MSD/TB_COVID_GFP
Tasmin153 opened this issue · comments
Hi,
I am currently working on phenotype prediction from unique strains of antitubercular agents. Thanks for this great work, SPECTRA would be helpful to test the model that I am working on. I was trying to reproduce the analysis for TB drug splits. I have downloaded the required data files from the dataverse page. But in the "run_baseline.py" file, I find that there are some missing files like input_gff_file, reference_nucleotide, and full_reference_sequence. Could you let me know how can I get these files and run the "run_baseline.py" file correctly?