milot-mirdita

Rectangle

Move and resize windows on macOS with keyboard shortcuts and snap areas

mimalloc

mimalloc is a compact general purpose allocator with excellent performance.

tmate

Instant Terminal Sharing

simde

Implementations of SIMD instruction sets for systems which don't natively support them.

ColabFold

Making Protein folding accessible to all!

bioconda-recipes

Conda recipes for the bioconda channel.

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

ggtext

Improved text rendering support for ggplot2

fast_double_parser

Fast function to parse strings into double (binary64) floating-point values, enforces the RFC 7159 (JSON standard) grammar: 4x faster than strtod

pavian

🌈 Interactive analysis of metagenomics data

biowasm

WebAssembly modules for genomics

WFA-paper

Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

kmer-cnt

Code examples of fast and simple k-mer counters for tutorial purposes

ips4o

In-place Parallel Super Scalar Samplesort (IPS⁴o)

yaxpeax-x86

x86 decoders for the yaxpeax project

block-aligner

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

cute-nucleotides

Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

multitime

Time command execution over multiple executions

ips4o

In-place Parallel Super Scalar Samplesort (IPS⁴o)

genmap

GenMap - Fast and Exact Computation of Genome Mappability

conterminator

Detection of incorrectly labeled sequences across kingdoms

gtdb_to_taxdump

Convert GTDB taxonomy to NCBI taxdump format

libdash

The dash shell as a linkable library. Tracks https://git.kernel.org/pub/scm/utils/dash/dash.git, with extended interfaces, bindings for Python and OCaml, and tools for generating JSON representations of shell scripts.

Kalamari

:octopus: A curated database of completed assemblies with taxonomy IDs

guide

spacepharer

SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

EBI-Icon-fonts

A collection of functional and scientific icons for EMBL-EBI sites.

tbl2asn-forever

Use tbl2asn forever by pretending that it's still 2019

lukasa