Mike Mwanga's repositories
wf-extract_spike_gene
A workflow to extract the spike gene sequences from SARS-CoV-2 full genome sequence.
data-analysis-portfolio
Portfolio for data science and data analyst projects that I have been involved in.
Data_Science
Training requirements for joining projects
ml_sarscov2
Machine Learning Approach for Predicting CoVID-19 Cases and Classifying SARS-CoV-2 Variants
Day_1_Exercise
Lets review commands we have learned today
EANBiT-RT2020
Website for the 2019 iteration of EANBiT Residential Training.
Filman
Bioinformatics tool to filter human reads from raw datasets
Genomics-One-B
Step-by-Step
kenya-ncov-analysis
SARS-CoV-2 analysis using Nextstrain
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
Introduction_To_Linux
Basic Introduction_To_Linux
mikemwanga
Config files for my GitHub profile.
mini-projects-2020
Mini-projects for the 2020 EANBiT virtual training.
mini_project_2020
COVID-19 MiniProject
MSC-Project
Whole genome analysis of RVA G1P[8] strain before and after vaccine introduction in Kenya
ncov-kenya
SARS-CoV-2 Nexstrain build for Kenya
Phylogenetic_Assignment
Data and analysis of Phylogenetic data
Project-3
Interrogating public datasets and paths to results on COVID-19 in East Africa
Python4Bioinformatics2019
Updated materials for MSc Bioinformatics for Pwani University
ReadCounts
Tool to generate RNASeq count data
Sequencing_Reports
Dashboard to review weekly sequencing reports from the lab
spatial_maps
Creating spatial maps R
TeamMcCooke_HackBio2021_2
HackBio
Workflows_and_package_management
Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).