mhulsman

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

GLnexus

Scalable gVCF merging and joint variant calling for population sequencing projects

spiderdocs

Official repository for the SURF Spider platform user documentation

ibidas3

Conversion of Ibidas to Python 3

gramps

Source code for Gramps Genealogical program

pacbio_pipeline

PySAIS

A Python C module wrapper around the SA-IS suffix array construction algorithm by Yuta Mori.

ibidas

Ibidas is an environment for data handling and exploration, able to cope with different data structures and sources

slurm_withinnode_scheduler

Allows scheduling of jobs that occupy partial nodes for SLURM systems that only allow full node jobs

enhance

package manager for home directory

seqal

Sequence Alignment module for Python (based on implementation of Isaac Turner)

cluster_manager

Manages ipython cluster

cluster_tools

Robust handling of storage system on grid with python

rdn

Matlab toolbox for robust difference normalization of microarrays