mhoffman / kmos

kMC on steroids: A vigorous attempt to make lattice kinetic Monte Carlo modelling easier

Home Page:http://mhoffman.github.com/kmos/

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Running kmos on Linux cluster

mieand opened this issue · comments

Hi Max,
I was trying to run kmos on the Linux cluster. Do you have any experience with either this cluster or SuperMUC, which I guess should be similar?
I managed to install it, but when I try to compile my model using "kmos export ..." I get the attached output.
It seems like there is a problem with f2py.
Any ideas what I could try?
There is a couple of different python modules I could load. I have tried 2.6 and 2.7_anaconda.

Mie
kmos_export_output.txt

I haven't used kmos on either cluster. However it looks like f2py is not
finding the right path to the Fortran compiler all the time. You should
remove the export directory and try again after setting

export F2PY_FCOMPILER=gfortran

or

export F2PY_FCOMPILER=intelem

Furthermore

f2py -c --help-fcompiler

Should tell you which compiler are available (and found by f2py) on your
platform.

It wasn't that, but after downloading a new version of kmos it compiles.
I must somehow have messed up the previous version.
Thanks and sorry for the trouble.
Mie