Clemens Messerschmidt's repositories
affiliation_generator
Python script to generate list of affiliations for manuscripts
base_mask
Python functions to check base masks and translate to bcl2fastq flavour
progeny_domainadversarial_nn
Domain-Adaptation for Cancer Pathway Prediction
bih-cluster
BIH Cluster Wiki
bioconda-recipes
Conda recipes for the bioconda channel.
cbioportal
cBioPortal for Cancer Genomics
cd-diagram
Critical difference diagram with Wilcoxon-Holm post-hoc analysis.
cubi-tk
CUBI Tooling for SODAR, VarFish et al.
keras-vis
Neural network visualization toolkit for keras
MANTIS
Microsatellite Analysis for Normal-Tumor InStability
OptiType
Precision HLA typing from next-generation sequencing data
pigx_chipseq
Pipeline for Analysis of ChIP-Seq data
pROC
Display and analyze ROC curves in R and S+
pytorch_multi_input_example
Multi-Input Deep Neural Networks with PyTorch-Lightning - Combine Image and Tabular Data
rodeos-ingest
Code for ingesting omics data into omics storage based on iRODS capabilities
speed2
SPEED2:Inferring upstream pathway activity from differential gene expression
unofficial_irods_documentation
Best Practices and System Administrator documentation for iRODS systems by the community. NOT affiliated with RENCI or the iRODS project.