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mdozmorov / scRNA-seq_notes

A list of scRNA-seq analysis tools

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Rohit-Satyam opened this issue · comments

commented

Dear Dr. Mikhail

Thanks for organizing all the resources beautifully. They help me a lot and I wish to contribute to it. My suggestions are:

  1. simpleSingleCell seems to migrate to "Orchestrating Single-Cell Analysis with Bioconductor". I don't know if this is still helpful and maybe you can remove this resource. It can possibly be replaced by this workflow: https://kkorthauer.org/fungeno2019/singlecell/vignettes/1.2-preprocess-droplet.html OR http://bioinformatics.age.mpg.de/presentations-tutorials/presentations/modules/single-cell//bioconductor_tutorial.html

Few more suggested addition:

  1. Dave Tangs Blog: https://davetang.org/muse/2018/08/09/getting-started-with-cell-ranger/
  2. ASAP: https://asap.epfl.ch/home/tutorial?t=full_pipeline
  3. pbmc_roche: https://almutlue.github.io/batch_dataset/pbmc_roche.html#
  4. Rockfeller University latest scRNAseq tutorial: https://rockefelleruniversity.github.io/scRNA-seq/
commented

Thank you, Rohit, for the suggestions. I added all, fixed some formatting. If you see any other missing resources or imperfections, please, open another issue, or make a PR.