mdenker

syntalos

Synchronized data acquisition from diverse sources and flexible control for behavior experiments

acme

Asynchronous Computing Made ESI

LaPreprint

📝 A nicely formatted LaTeX preprint template

smttask

Maintain an electronic lab book for computational research

Tonic-Research-Project-Template

MotionClouds

Synthesizing moving textures with parameterized features

norse

Deep learning with spiking neural networks (SNNs) in PyTorch.

GPXParser.js

GPX file parser javascript library

PleaseJS

JavaScript Library for creating random pleasing colors and color schemes

frites

Framework for Information Theoretical analysis of Electrophysiological data and Statistics

workbench

The workbench for designing and executing POI workflows

pycircstat

Toolbox for circular statistics with Python

EBRAINS-cosim

EBRAINS-cosim

Suite2P

Tools for processing 2P recordings

ViSAPy

Python package for generating benchmark data for evaluating spike sorting methods

hbp_archive

A high-level API for interacting with the Human Brain Project archival storage at CSCS

neurotic

Curate, visualize, annotate, and share your behavioral ephys data using Python

SamuROI

SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.

viziphant

Visualization of electrophysiological data from Elephant

CaImanSWAP

CaImanSWAP: Slow Waves Analysis Pipeline (SWAP) for Optical Data (wide-field fluorescence microscopy + calcium imaging)

ElePhySWAP_SOAP

ElePhySWAP: Slow Waves Analysis Pipeline (SWAP) for Electrophysiological Data (collected by means of Multi-Electrode Surface Array)

hbp-bsp-issues

Ticketing system for developers/testers and power users of the Brain Simulation Platform of the Human Brain Project

pcp_use_cases

heat

Distributed tensors and Machine Learning framework with GPU and MPI acceleration in Python

phy-data

Example datasets used for automated tests

luigi

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

knowledgegraph

This is a repository to exchange information, ask questions, create issues and feature requests for the knowledgegraph of HBP.

NeoAnalysis

KiloSort

GPU code for spike sorting

expipe

Experiment-data management platform