mdchia's starred repositories
fast5_fetcher
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
PlotsOfData
Shiny App for comparison of samples
fastq_utils
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
DABEST-python
Data Analysis with Bootstrapped ESTimation
POREquality
This is an early version of POREquality, an R Markdown document designed to be ran as part of a Nanopore local basecalling pipeline.
carrierseq
a sequence analysis workflow for low-input nanopore sequencing
metagenomics-tutorials
Additional scripts from tutorials on tylerbarnum.com
phd_thesis_markdown
Template for writing a PhD thesis in Markdown
NGSPanPipe
Developing pangenome from NGS short-reads