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Mayrlab's repositories

Bioinformatics pipeline for single-cell 3' UTR isoform quantification

Language:PythonGPL-3.015 3 63

QAPA pipeline for enhancer-related RNA-seq datasets

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Merge and process multiple 3' UTR datasets

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Pipeline to count reads in curated 3'-end mm10 peaks

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generates human UTRome from Human Cell Landscape data

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kallisto benchmarking of multi-UTR quantification for 3'-end tag-based RNA-seq

Language:HTMLBSD-3-Clause000

3' UTR cleavage site identification from the Mouse Cell Atlas

Language:R01 7

Scripts used to generate figures for the scUTRquant manuscript

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Bioinformatics pipeline for 3'-seq data of Sommerkamp et al. 2020

Language:Python000

Snakemake pipeline for generating truncated transcriptome annotations with txcutr

Language:Python000

Peak Width Analysis of the Tabula Muris Libraries

Language:Jupyter Notebook000