Mayrlab's repositories
scUTRquant
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
utr-enhancers
QAPA pipeline for enhancer-related RNA-seq datasets
atlas-mm
Merge and process multiple 3' UTR datasets
Language:R000
cleavage-rate
Pipeline to count reads in curated 3'-end mm10 peaks
Language:Python000
hcl-utrome
generates human UTRome from Human Cell Landscape data
kallisto-overlap
kallisto benchmarking of multi-UTR quantification for 3'-end tag-based RNA-seq
Language:HTMLBSD-3-Clause000
mca-utrome
3' UTR cleavage site identification from the Mouse Cell Atlas
scUTRquant-figures
Scripts used to generate figures for the scUTRquant manuscript
sommerkamp20
Bioinformatics pipeline for 3'-seq data of Sommerkamp et al. 2020
Language:Python000
txcutr-db
Snakemake pipeline for generating truncated transcriptome annotations with txcutr
Language:Python000
tmuris-peaks
Peak Width Analysis of the Tabula Muris Libraries
Language:Jupyter Notebook000