Matthias Blum (matthiasblum)

matthiasblum

Geek Repo

Company:EMBL-EBI

Location:Cambridge, UK

Twitter:@matthiasblum

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Matthias Blum's repositories

hmmer-cwl

CWL tool and workflow descriptions for HMMER

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idrpred

A consensus-based predictor of intrinsically disordered regions in proteins

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pfam-alphafold

Pfam × AlphaFold mappings

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bioconda-recipes

Conda recipes for the bioconda channel.

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geneontology.github.io

Repository for storing GO documentation, directly available through the general GO site

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glasson

Yet another file format for storing Hi-C contact maps

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h5hg

Accessing NGS data stored in HDF5 files

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h5ngsqc

Storing NGS data into HDF5 files

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HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

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hicitco

Hi-C Iterative Correction

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iced

Normalizing Hi-C contact counts efficiently

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logiqa

Long-range genome interactions quality assessment

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MMseqs2-App

MMseqs2 app to run on your workstation or servers

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mundone

A Python library to get mundane tasks done

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rnacentral-webcode

RNAcentral website source code

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spino

Spino is a micro-LIMS for sequencing libraries

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SpliceAI

A deep learning-based tool to identify splice variants

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