Master's repositories
SingleCellCRC-pipeline
Analytical pipeline of scRNA-seq and spatial transcription datastes of CRC
single-cell-best-practices-zh
单细胞最佳实践-中文版
HumanBreastCellAtlas
Repository for codes for the HBCA paper
Muto_Wilson_NComm_2020
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
cpplot
Visualize the results of cell-cell communication analysis
rnaflow
A simple RNA-Seq differential gene expression pipeline using Nextflow
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
chipseq-1
ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).
wgs-Analysis-process
使用gatk进行wgs全基因组分析寻找SNP变异的流程
ATAC-pipe
Analysis pipeline for ATAC-seq Data
ChIP-seq
Nextflow pipeline for ChIP-seq data quality controls and analysis
RNA-seq-downstream-analysis
Arabidopsis RNA_-seq downstream analysis shiny app
oecophylla
shotgun pipeline
Snakemake-CHIPseq
pipeline for CHIPseq analysis