martinjvickers

KAST

Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.

xftools

Tools developed for use in Xiaoqi Feng's lab.

SLURM-cheat-sheet

Cheat sheet for interacting with the SLURM scheulder

aionplot

A complete web platform for visualizing and disseminating time series data

B3

Biodiversity Genomics Academy 2023: Gene prediction with BRAKER3

bioinformatics_munging

Simple data "munges" to get certain things done.

cloudpool_testing

Messing around with cloudpool

containers

Bioinformatics containers

CUDASW4

CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search

d2-tools

This is a backup of https://code.google.com/archive/p/d2-tools/

diffBAM

A program to comprehensively compare several BAM files

docker-lachesis

Docker Image for the Lachesis Hi-C Scaffolder

expvip-ansible

Ansible script for provisining expVIP

GlobalMLBuildingFootprints

Worldwide building footprints derived from satellite imagery

install_scripts

Once a SysAdmin, always a SysAdmin. Scripts for installing software

Jellyfish

A fast multi-threaded k-mer counter

KAST_docker

docker image for kast

KAST_figures

Data and scripts for KAST figures

kmer_search

Given a fastq/fasta file, return kmer counts from KMC3 database

LSPone-Controller

Software to control a Laboratory syringe pump

martinjvickers

Config files for my GitHub profile.

miniature-sniffle-mapper

my_aweseome_analysis

stuff i did on thursday

pyBigWig

A python extension for quick access to bigWig and bigBed files

RagTag

Tools for fast and flexible genome assembly scaffolding and improvement

Red

Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.

reduced_alphabet

A small program to explore reduced alphabet alignment free comparisons

SmartThingsPublic

SmartThings open-source DeviceTypeHandlers and SmartApps code

thermal_parser

FLIR/DJI IR Camera Data Parser, Python Version

website

Lab Website