m1 macos installation problem
yy945635407 opened this issue · comments
Hi, I am using an m1 macbook, and when I try to install openl3, I encounter the problem when the script tries to install h5py, but I have installed h5py in my virtual environment.
The problem is as below:
building 'h5py.defs' extension
creating build/temp.macosx-11.0-arm64-3.8
creating build/temp.macosx-11.0-arm64-3.8/private
creating build/temp.macosx-11.0-arm64-3.8/private/var
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include -arch arm64 -fPIC -O2 -isystem /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include -arch arm64 -DH5_USE_16_API -I./h5py -I/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/lzf -I/opt/local/include -I/usr/local/include -I/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/numpy/core/include -I/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/python3.8 -c /private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c -o build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.o
In file included from /private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:731:
In file included from ./h5py/api_compat.h:26:
In file included from /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969:
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with "
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:16556:56: error: too few arguments to function call, expected 3, have 2
__pyx_t_1 = H5Oget_info(__pyx_v_loc_id, __pyx_v_oinfo); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1509, __pyx_L1_error)
~~~~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Opublic.h:497:15: note: 'H5Oget_info3' declared here
H5_DLL herr_t H5Oget_info3(hid_t loc_id, H5O_info2_t *oinfo, unsigned fields);
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:16671:95: error: too few arguments to function call, expected 5, have 4
__pyx_t_1 = H5Oget_info_by_name(__pyx_v_loc_id, __pyx_v_name, __pyx_v_oinfo, __pyx_v_lapl_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1520, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Opublic.h:557:15: note: 'H5Oget_info_by_name3' declared here
H5_DLL herr_t H5Oget_info_by_name3(hid_t loc_id, const char *name, H5O_info2_t *oinfo, unsigned fields,
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:16786:144: error: too few arguments to function call, expected 8, have 7
__pyx_t_1 = H5Oget_info_by_idx(__pyx_v_loc_id, __pyx_v_group_name, __pyx_v_idx_type, __pyx_v_order, __pyx_v_n, __pyx_v_oinfo, __pyx_v_lapl_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1531, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Opublic.h:631:15: note: 'H5Oget_info_by_idx3' declared here
H5_DLL herr_t H5Oget_info_by_idx3(hid_t loc_id, const char *group_name, H5_index_t idx_type,
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:17821
__pyx_t_1 = H5Ovisit(__pyx_v_obj_id, __pyx_v_idx_type, __pyx_v_order, __pyx_v_op, __pyx_v_op_data); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1630, __pyx_L1_error)
~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Opublic.h:1326:15: note: 'H5Ovisit3' declared here
H5_DLL herr_t H5Ovisit3(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, H5O_iterate2_t op,
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:17936:143: error: too few arguments to function call, expected 8, have 7
__pyx_t_1 = H5Ovisit_by_name(__pyx_v_loc_id, __pyx_v_obj_name, __pyx_v_idx_type, __pyx_v_order, __pyx_v_op, __pyx_v_op_data, __pyx_v_lapl_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1641, __pyx_L1_error)
~~~~~~~~~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Opublic.h:1492:15: note: 'H5Ovisit_by_name3' declared here
H5_DLL herr_t H5Ovisit_by_name3(hid_t loc_id, const char *obj_name, H5_index_t idx_type,
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:21846:13: warning: assigning to 'void *' from 'const void *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
__pyx_t_1 = H5Pget_driver_info(__pyx_v_plist_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 2016, __pyx_L1_error)
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:34606:68: error: too few arguments to function call, expected 4, have 3
__pyx_t_1 = H5Sencode(__pyx_v_obj_id, __pyx_v_buf, __pyx_v_nalloc); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 3303, __pyx_L1_error)
~~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Spublic.h:373:15: note: 'H5Sencode2' declared here
H5_DLL herr_t H5Sencode2(hid_t obj_id, void *buf, size_t *nalloc, hid_t fapl);
^
2 warnings and 6 errors generated.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
WARNING: No metadata found in /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages
Rolling back uninstall of h5py
Moving to /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/h5py-3.6.0.dist-info/
from /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/~5py-3.6.0.dist-info
Moving to /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/h5py/
from /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/~5py
error: legacy-install-failure
× Encountered error while trying to install package.
╰─> h5py
note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
My python version: 3.8.13
By the way, I have tried to build from source, but this problem of h5py still exists
Same issue for me with python version 3.10.4
Having the same error as of July 2022 with both Python 3.8 and 3.9. Help would be greatly appreciated!
I am also having this issue. I have tried Python 3.7, 3.8 and 3.9.