Marie Held's repositories
ObjectCountingAndMeasurements
Counting and more
ROI-intensities
extract channel, generate ROIs from segmentation and measure channel intensities
CD7-downstream-analysis-and-tools
Downstream data analysis and visualisation tools
Count-objects-within-objects
Count objects within objects programmatically
Fiji-snippets
Bits and pieces in Fiji macro language
General_Fiji_macros
general macros for standard tasks
Incucyte_image-handling_and_processing
Incucyte image handling and processing for third party software analysis
Insect-counting-in-zones
Counting insects in different zones within larger compartments
intensity-of-individual-FISH-labelled-bacteria
identify individual bacteria and measure the mean intensity
MSD-analyser
Implementation of matlab class MSD analyzer by Jean-Yves Tinevez
python-snippets
short python scripts
ramification_index
Calculate ramification index of objects in segmentation mask
Reproducible-Research-for-Microscopists
Copy of the Reproducible Research lessons, to alter for CCI
TrackMate-Track-Length-and-Straightness
Calculates the total Track Length, Track Displacement and Track Straightnees from TrackMate "Spots in Tracks statistics.txt" results
wound-healing
wound healing assay