This is an implementation (kiwi-segm1.ipynb) of a kiwi fruit seeds image segmentation midter project proposed by prof. A. Lundervold during BMED 2021 course.
The 3D dataset, consisting of 128 transaxial slices through the long axis of the kiwi, was acquired with the 7 T Bruker Pharmascan MRI scanner at the Molecular Imaging Center (MIC/Vivarium), University of Bergen, using the 2D RARE pulse sequence (Echo Train Length = 8, TR = 18520 ms, TE = 63.9 ms, No. of Averages = 2, Flip Angle = 180 deg, Slice thickness = 0.5 mm, In-plane pixel resolution = 0.234 x 0.234 mm$^2$, Acquisition matrix = 256 x 256, Number of slices = 128).