marcelTBI

CNV_data

Data for training of CNV caller

GenomeScreen

Scripts and data needed to run GenomeScreen

RNAlocmin

Finds local minima of RNA + constructs barrier tree

treekin

Numerically integrate a Markov process -- especially for predicting RNA folding kinetics

MarCNV

React frontend for automated annotation of Copy Number Variants with ACMG criteria and machine learning

AdventOfCode2021

Advent of Code 2021 solutions as part of my learning programming in C#. WARNING: some of the solutions are dirty.

BHGbuilder

Gets local minima list and tries to compute their saddles, landmap, and LM to LM energy barriers

BTCexchange

CNV_population_study

Data and scripts for recreation of results for article in preparation: Understanding Genetic Variability: Exploring Copy Number Variants through Non-Invasive Prenatal Testing in European Populations

comparator

compare output files from RNAlocmin and barriers

compHeights

comparator tool for energy heights from barriers and DSUeval

forgi

An RNA manipulation library.

gfold

Boltzman sampling of RNA secondary structures with support of pseudoknots of type genus 1 (1-structures).

graphSim

Simulation and visualisation tool for RNA sequences

RateGraph

Reduces the state space from BHGbuilder output file and create a rate matrix for treekin

react-task-tracker

Simple Task tracker webpage in React as part of learning React

RNAlandmap

Generates landmap(landmark) from RNAsubopt -e output

TXODDS-task

Producer-consumer html crawler