Manase Aloo's repositories
submission_checklist
A checklist to help you avoid all those minor errors when submitting a scientific manuscript
A2TEA.Workflow
Automated Assessment of Trait-specific Evolutionary Adaptations
Analyses_Pipelines
Analyses pipelines that I use for my work
arl
lists of most popular repositories for most favoured programming languages (according to StackOverflow)
Assembly_Annotation_Course
Repository for all the code used in the courses “Genome and Transcriptome Assembly” and “Organization and annotation of eukaryote genomes”.
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-nextflow
A curated list of nextflow based pipelines
bioinformatics-workbook
Bioinformatics Workbook repository
ESoup
A wrapper around NCBI's Entrez utilities
bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
Cephalogenomics
Script for genome assembly, phylogenetic reconstruction and comparative genomics in cephalochordate genera.
FastDTLmapper
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
Genome_analysis_scripts
Scripts used for various genomic analyses, including assembly and annotation
Image-Scraper-And-Downloader
Scrape images and download them using python!
Introductions
An Introductory repo for maintainers, collaborators and the bioinformatics community at large
jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
MyFirstFork
Fork this repository and make changes to the README
public_scripts
collection of bioinformatic scripts
Publication_scripts
This repository contains scripts from published or submitted manuscripts.
Python4BioinformaticsV2
Updated materials for MSc Bioinformatics for Pwani University
seqtk
Toolkit for processing sequences in FASTA/Q formats
sqlitestudio
A free, open source, multi-platform SQLite database manager.
syntenet
An R package to infer and analyze synteny networks from protein sequences
training
Nextflow training material
Workflows_and_package_management
Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).