malemay

Marc-André Lemay's repositories

Gene-centered haplotyping from SNP data

Language:RGPL-3.06 30

Extract aligned reads containing a set of k-mers

Language:CGPL-3.05 1 2

Utilities to work with GWAS results from GAPIT and k-mers GWAS

Language:RGPL-3.03 10

Structural variation analysis in soybean using Oxford Nanopore and Illumina sequencing data

Language:RGPL-3.0300

Code used for "k-mer-based GWAS enhances the discovery of causal variants and candidate genes in soybean"

Language:TeXGPL-3.02 10

Detection of deletions and duplications from GBS data

Language:RGPL-3.01 20

Compute pairwise LD from presence/absence of k-mers

Language:CGPL-3.01 10

My solutions to Advent of code 2023 challenges

Language:R010

Refinement of structural variants using Oxford Nanopore sequencing data

Language:RGPL-3.002 1

Object-oriented Python chess program

Language:Python000

Formation sur le package grid de R

020

Config files for my GitHub profile.

Language:R010

Functions to compare a SV call sets against a truth set.

Language:RMIT010

A program to call variants from genome alignment

Language:C++GPL-3.0000

Processing the output of svmu and converting it to VCF format

Language:RGPL-3.0010