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MalariaGEN (malariagen)

MalariaGEN

malariagen

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Home Page:www.malariagen.net

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MalariaGEN's repositories

pipelines

Pipelines for processing malaria parasite and mosquito genome sequence data.

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malariagen-data-python

Analyse MalariaGEN data from Python

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vector-data

Documentation, discussion forum and issue tracker for malaria vector genomic data released by MalariaGEN.

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GeneticReportCard

Genetic Report Card code

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ano-spp

A targeted amplicon sequencing panel to simultaneously identify mosquito species and Plasmodium presence across the entire Anopheles genus

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agam-selection-atlas

Ag1000G selection atlas

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grcMalaria

Tools for processing and analyzing SpotMalaria Genetic Report Cards

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journal-club

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ag1000g-phase1-vgsc-report

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ag1000g-phase2-vgsc-report

Analysis of the Vgsc gene as part of Ag1000G phase 2.

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ag1000g-phase3-data-paper

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mgenv

Repository with installation scripts and environment definitions for conda and texlive, for standardising environments across the MalariaGEN resource centre team.

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pf-haploatlas

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sims-backbone

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Pf6plus

A repository hosting Pf6+, an accessible resource with over 13,000 WGS and targeted-genotyped P. falciparum samples with information on drug-resistant phenotypes.

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anopheles-genomic-surveillance.github.io

Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN

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anospp-analysis

Python package for ANOSPP data analysis

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datalab-guide

User guide and documentation for the MalariaGEN DataLab service

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deprecated-ag1000g-phase3-data-paper

Repository for building a manuscript describing the Ag1000G phase 3 data resource.

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grcMalariaGeodata

Geographical data required by the grcMalaria R package in order to generate maps from GRC data

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intake

Intake data catalogs for MalariaGEN.

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mali-analysis-paper

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malvecbib

A bibtex bibliography for all things related to malaria vector biology and genomics.

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manubot-test

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parasite-data

Documentation, discussion forum and issue tracker for malaria parasite genomic data released by MalariaGEN.

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phenotyper

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pv-muhap

Supporting notebooks and data for the Pv microhaplotypes paper

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streamlit-plotly-events2

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vobs-sea-pilot-paper

A pilot study of whole-genome sequencing of diverse Anopheles species from Cambodia

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vobs-updates

Minisite with technical updates from the Malaria Vector Genome Observatory.

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