majkiw / bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

bdg-formats

Summary

Big Data Genomics (BDG) bdg-formats provides Apache Avro schema for genomic data such as aligned reads, variants, and genotypes. The schema are used to generate a library of Java code used by downstream projects such as ADAM, Avocado, Quinine, and Mango.

Using bdg-formats

Add the following dependency to your Maven build:

<dependency>
  <groupId>org.bdgenomics.bdg-formats</groupId>
  <artifactId>bdg-formats</artifactId>
  <version>${version}</version>
</dependency>

Building bdg-formats

Install Apache Maven version 3.3.3 or later.

$ mvn package

License

bdg-formats is released under an Apache 2.0 license.