Matt Anson's repositories
ansible.scrumpy
Ansible playbook for installing http://mudshark.brookes.ac.uk/ScrumPy
gvl.ansible.smrt_analysis
Ansible scripts for setting up the smrt analysis portal on a GVL
ansible-collection-hashicorp
Ansible collection for Hashicorp tools (Vault, Consul, etc)
ansible.snapperdb
Ansible playbook for installing https://github.com/phe-bioinformatics/snapperdb
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
eventlet
Concurrent networking library for Python
gvl_commandline_utilities
Scripts for users of GVL cloud instances. These scripts configure GVL servers as command line bioinformatics platforms.
jupyterlab-nvdashboard
A JupyterLab extension for displaying dashboards of GPU usage.
keycloak-orgs
Single realm, multi-tenancy for SaaS apps
mykrobe-summary
Make a csv summary of lots of Mykrobe JSON outputs
PHEnix
Public Health England SNP calling pipeline.
prometheus-slurm-exporter
Prometheus exporter for performance metrics from Slurm.
pulp-certguard
Pulp plugin that provides an x.509 certificate based content-guard.
pulp_container
Pulp Container Registry
qc_nextflow
A nextflow pipeline for inital QC of Illumina sequencing data
shiver
Sequences from HIV Easily Reconstructed
wtdbg2
A fuzzy Bruijn graph approach to long noisy reads assembly