Lee Zamparo's repositories
DNAbarcodes
Simple generator of DNA barcodes for sequencing experiments
allennlp-demo
code for demo.allennlp.org
AttentionDeepMIL
Implementation of Attention-based Deep Multiple Instance Learning in PyTorch
bindspace_revisions
Revisions for BindSpace
blog_source
source and posts that generates content for lzamparo.github.io
coling2018
data and code for coling2018 paper
dask-jobqueue
Deploy Dask on job schedulers like PBS, SLURM, and SGE
DiCE
Generate Diverse Counterfactual Explanations for any machine learning model.
epig
Prediction-oriented Bayesian active learning (AISTATS 2023)
kipoi
Kipoi's model zoo API
lzamparo.github.io
my github.io site
MCMC_and_Dynamics
Practice with MCMC methods and dynamics (Langevin, Hamiltonian, etc.)
mistral-src
Reference implementation of Mistral AI 7B v0.1 model.
protein_fitness
test for protein fitness
PyTorchNLPBook
Code and data accompanying Natural Language Processing with PyTorch published by O'Reilly Media https://nlproc.info
Representer_Point_Selection
code release for Representer point Selection for Explaining Deep Neural Network in NeurIPS 2018
safe_harbor
Side project to find jointly accessible regions in pairs of celltypes
sams-vae
Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" by Bereket & Karaletsos published in Neurips 2023
ShogunScripts
These scripts were written by Irene Kaplow for running Shogun with various kernels.
simple-ebms
Contrastive-divergence EBMs on toy 2D datasets. Can be trained and visualised with a simple API.
simple_spearmint
Spearmint, without the gum
sparse-structured-attention
Sparse and structured neural attention mechanisms
TCN
Sequence modeling benchmarks and temporal convolutional networks
VQ-VAE
Minimalist implementation of VQ-VAE in Pytorch
yahoo-earnings-calendar
Scrapes Yahoo! Finance earnings calendar to get data for a specific date or a date range.