Luis Santos's repositories
patchwork
The Composer of ggplots
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
scAlign
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
seurat
R toolkit for single cell genomics
dotdotdot
Example vignette for dotdotdot software
scRNA.seq.course
Analysis of single cell RNA-seq data course
singlecelldb
An actionable database of publicly available single-cell RNA-seq data
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
numpy
The fundamental package for scientific computing with Python.
swirl_courses
:mortar_board: A collection of interactive courses for the swirl R package.
pysb
Python framework for Systems Biology modeling
indra
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
project001
My first project on github!
datasharing
The Leek group guide to data sharing
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
HarvardXCourse
Introduction to Linear Models and Matrix Algebra Course by Rafael Irizarry and Michael Love. http://genomicsclass.github.io/book/
rasmodel
RAS Executable Model (REM)
dataanalysis
The lecture slides for Coursera's Data Analysis class