Lufield's repositories
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
Calcium-Imaging-Analysis
User-friendly software for motion-correcting calcium imaging videos, automatically finding ROIs using the CNMF method and manually refining them.
CalciumSignalExtract
Extract regions of interest based on correlated pixel intensity
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
EZcalcium
Calcium Data Extraction and Analysis
hello-world
firist try
LabelsToROIs
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
NPMK
Neural Processing Matlab Kit is a set of functions for loading and manipulating data from Blackrock Microsystems' data files (.CCF, .NEV, .NSx).
OrgaMapper
ImageJ plugin for detecting and mapping organelles within a cell
ringIntensityDistribution
This macro divides the cell into rings of identical area that converge towards the nucleus center. The intensity density of the interest signal is then measured per ring and normalized to the total intensity density of the cell.
SAMJ-IJ
An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
ZeroCostDL4Mic
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy