ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

[Esakki ponraj]

I have been using google colab. I would like to work with Hidden markov, so I would like to install a library called hmms On installing pip install hmms, i received the following error.

ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

I also try to install the same library in Pycharm IDE, I received the same error with some call backs.

Command "python setup.py egg_info" failed with error code 1 in C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\

Collecting hmms
  Using cached https://files.pythonhosted.org/packages/e9/e4/c070c44ec8a391f6d5501316d1ed7615058f1fd365ff4ed65c9636d0bf62/hmms-0.1.tar.gz
    Complete output from command python setup.py egg_info:
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\setup.py", line 22, in <module>
        ext_modules=cythonize(glob.glob('hmms/*.pyx'), language_level=3, include_dirs=[numpy.get_include()]),
      File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Build\Dependencies.py", line 955, in cythonize
        c_options = CompilationOptions(**options)
      File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Compiler\Main.py", line 563, in __init__
        raise ValueError(message)
    ValueError: got unknown compilation option, please remove: include_dirs


What does it means and how can i rectify this issue ? kindly suggest some solution to get working

[Mohammed Danish Khan]

I have been using google colab. I would like to work with Hidden markov, so I would like to install a library called hmms On installing pip install hmms, i received the following error.

ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

I also try to install the same library in Pycharm IDE, I received the same error with some call backs.

Command "python setup.py egg_info" failed with error code 1 in C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\

Collecting hmms
  Using cached https://files.pythonhosted.org/packages/e9/e4/c070c44ec8a391f6d5501316d1ed7615058f1fd365ff4ed65c9636d0bf62/hmms-0.1.tar.gz
    Complete output from command python setup.py egg_info:
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\setup.py", line 22, in <module>
        ext_modules=cythonize(glob.glob('hmms/*.pyx'), language_level=3, include_dirs=[numpy.get_include()]),
      File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Build\Dependencies.py", line 955, in cythonize
        c_options = CompilationOptions(**options)
      File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Compiler\Main.py", line 563, in __init__
        raise ValueError(message)
    ValueError: got unknown compilation option, please remove: include_dirs


What does it means and how can i rectify this issue ? kindly suggest some solution to get working

Hey, did you find any solution to this problem?

[Esakki ponraj]

No Regards / Yours sincerely

…

--------------------------------------------------------------- Esakkiponraj Esakkimuthu e-Mail: [e-mail]

--------------------------------------------------------------- *$$$ The race has not yet over bcoz I haven't won yet** $$$*

On Tue, Sep 24, 2019 at 11:27 PM Mohammed Danish Khan < ***@***.***> wrote: I have been using google colab. I would like to work with Hidden markov, so I would like to install a library called hmms On installing pip install hmms, i received the following error. ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. I also try to install the same library in Pycharm IDE, I received the same error with some call backs. Command "python setup.py egg_info" failed with error code 1 in C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\ Collecting hmms Using cached https://files.pythonhosted.org/packages/e9/e4/c070c44ec8a391f6d5501316d1ed7615058f1fd365ff4ed65c9636d0bf62/hmms-0.1.tar.gz Complete output from command python setup.py egg_info: Traceback (most recent call last): File "<string>", line 1, in <module> File "C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\setup.py", line 22, in <module> ext_modules=cythonize(glob.glob('hmms/*.pyx'), language_level=3, include_dirs=[numpy.get_include()]), File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Build\Dependencies.py", line 955, in cythonize c_options = CompilationOptions(**options) File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Compiler\Main.py", line 563, in __init__ raise ValueError(message) ValueError: got unknown compilation option, please remove: include_dirs What does it means and how can i rectify this issue ? kindly suggest some solution to get working Hey, did you find any solution to this problem? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#13?email_source=notifications&email_token=AJJH3M7FIUQH5EZUJBRJRSTQLKA3LA5CNFSM4IN3BLWKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOD7P3TLA#issuecomment-534755756>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AJJH3M5HCKSNDRMUAVZ5AV3QLKA3LANCNFSM4IN3BLWA> .

[shahab-anjum]

i also got the same issue so plz help me

[shahab-anjum]

i need hmm in my thesis so if u?

[Esakki ponraj]

I too had the same problem of implementing HMM in my thesis. I found some solutions given by Lazy programmer tutorial for Hidden Markov model solves my problem. But he develop the HMM model from the scratch using some DL frameworks.. Better you can go with that option, since hmms and hmmlearn library doesn't support continuous data. Regards / Yours sincerely

…

--------------------------------------------------------------- Esakkiponraj Esakkimuthu e-Mail: [e-mail]

--------------------------------------------------------------- *$$$ The race has not yet over bcoz I haven't won yet** $$$*

On Mon, Dec 2, 2019 at 8:54 PM shahab-anjum ***@***.***> wrote: i need hmm in my thesis so if u? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#13?email_source=notifications&email_token=AJJH3MZOSTEGRJBBYL2XP3LQWVRYDA5CNFSM4IN3BLWKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEFUWGEY#issuecomment-560554771>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AJJH3M45K2E3W62U5RHQRSTQWVRYDANCNFSM4IN3BLWA> .

[medh61]

You install the library hmms from github; and the problem will be solved
The command is :
!python -m pip install git+https://github.com/lopatovsky/HMM
Duplicate of #s#egg=HMMs

[medh61]

You install the library hmms from github; and the problem will be solved
The command is :
!python -m pip install git+https://github.com/lopatovsky/HMMs#egg=HMMs

[Nicolás Sánchez]

Hello! I'm trying to install another github package:

https://github.com/ismrmrd/ismrmrd-python

After trying to install it with the !pip install command, I get the following error:

ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

Can someone hel me further?

[Yuvi Panda]

Would love to see a release made to PyPI with this patch installed. As of now, installing from PyPI fails with this error for me.

[Antoine Gicquel]

The solution of @medh61 worked for me, with python 3.9.

[Griffin Brookshire]

Using Python 3.10, had to use: python3 -m pip install git+https://github.com/lopatovsky/HMMs