Conda/Mamba bioconda installation fails
augeas opened this issue · comments
Installing via bioconda/mamba to ensure all dependencies are present:
git clone https://github.com/loosolab/TOBIAS.git
cd TOBIAS
mamba env create -f tobias_env.yaml
source activate TOBIAS_ENV
mamba install tobias -c bioconda
fails with the following error:
LibMambaUnsatisfiableError: Encountered problems while solving:
- package tobias-0.15.1-py310hd6be1da_0 requires python >=3.10,<3.11.0a0, but none of the providers can be installed
However, trying to pin the Python version in tobias_env.yaml
also fails, with errors regarding the appdirs
package.
Hi @augeas,
unfortunately, I can not reproduce your error. However, from your error message, I gather that you are installing TOBIAS version 0.15.1. Our current version is 0.16.1. So please make sure that you are on the newest version.
If that doesn't fix the issue a workaround could be to install tobias using pip -> pip install tobias
.
I hope I could help. Please let me know how it goes.
Hendrik
False alarm, though I had observed this locally and on our HPC cluster. mamba clean -a -y
was enough to resolve this, but it's annoying that mamba remove --name TOBIAS_ENV --all
wasn't enough...
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